CDAO Store

Import Datafiles to the TripleStore

URL of RDF file:

Translate a file into CDAO format

File format MEGA PHYLIP NEXUS NeXML File name

[Note: export options are given when at a specific tree]

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Search the TripleStore:

by means of

• Author:

• Treebase Accesion Number

  Tree:

• By method of construction

  Algorithm: 2 runs, 10 m generations 6-parameter parsimony bayesian inference and relaxed molecular clock bayesian inference bayesian bayesian mcmc bio neighbor joining bionj bootstrap analysis bootstrap consensus bootstrap by hand character optimization cluster analysis confidence interval sieving consensus of maximum likelihood, parsimony, and distance distance equal weight fast parsimony bootstrapping fitch margoliash fitch-margoliash generic genetic algorithm genetic distance goloboff fit parsimony (k=2) greedy assembly using repetition indices gtr g gtr i gamma gtr r heuristic heuristic search hky85-gamma implied weight implied weights inaase iterative strongest evidence analysis jackknife jacknife lake's invariants likelihood ratchet manual compatability manual maximum likelihood and neighbor joining maximum likelihood maximum parsimony minimize deep coalescences minimum evolution and maximum likelihood minimum evolution-k2p minimum evolution ml mp nj ml, nj, mp mp and ml mp and nj mp mp, nj, ml mprs n/a na neighbor joining neighbor joining, parsimony and maximum likelihood neighbour joining, parsimony and bayesian inference parsimony, bayesian parsimony dollo parsimony jackknifing parsimony parsimony, max. likelihood, and neighbor joining parsimony ratchet parsimony wagner preference profdistance nj profile distance nj quartet puzzle ratchet rci reweighted sci reweighted shallowest divergences stratocladistics successive weighting supertree composite tamura-nei unspecified upgma veto supertree weighted parsimony

• By Software used

  Sofware: bayesphylogenies beast 1.4.5 beast best biosys-1 by hand clados? clustal w clustalw clustal x clustalx dnaml estbranches and multidivtime fastdnaml formulae 9 & 10 garli genetree gtr g hennig86 and paup hennig86 hennig86, paup hennig86, phylip inaase iqpnni jackknife jac macclade manual mega 2.0 mega2 mega 3.1 mega3.1 mega4 megalign mega mega, paup, phylip mesquite modified ga molphy-protml mr bayes mrbayes n/a na ni and li distance nona and paup nona none not specified nt-sys ntsys oy paml parsimony jacknifer paup* 4.04a for the macintosh paup and contree paup and hennig86 paup and mega paup and mrbayes paup and njboot2 paup and phylip paup + hennig86 paup, hennig86 paup, hennig86, nona, and pee-wee paup, hennig86, nona, pee-wee paup, hennig86, phylip paup paup* paup, phylip pee-wee penny personal software phase phylip 3.57c dnaml phylip and wagner78 phylip dnaml phylip phylip paup phylobayes phylomatic phyml physic physis physys & phylip physys populations poy profdist profile distance puzzle python script raxml raxml v.7.0 saitou & nei sepal sepal (salisbury b.a.(1999) snap workbench systat tnt treecon treefinder tree-puzzle and phylip tree-puzzle unknown wagner 78 wagner78 winclada and nona winclada wisconsin package xac

• Trees containing a specific Taxa

  TU:

• Trees of a certain size
  Criterion: node internal leaf Direction: less greater Size:

Go to CDAO Explorer Application

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WARNING: This is still in alpha-testing. There are known bugs that will crash the application. If you are using this and a tree crashes or does not display properly, please email us